Today I went along to the Containers for High Performance Computing (HPC) workshop in Cambridge.
It was a hands on event using two technologies for containerization on HPC:
Piz Diant has had a recent upgrade and became the third fastest supercomputer on the planet. And with temporary access to a beast like that, it was hard to resist taking a “software selfie” and getting the bragging rights of running your own software on it. So, if you ever get the chance to use Shifter on a supercomputer…
# Allocate a node using the SLURM workload manager
salloc -N1 -C gpu --reservation=shifter-camb
# Load the shifter module
module load shifter
# Pull the Stencila Docker image for R using Shifter
shifterimg pull stencila/rho
# Run an interactive console in that image
srun --pty shifter --image stencila/rho bash
# We're now on the compute node inside
# the stencila/rho container so run Stencila
Rscript -e "stencila:::run()"
Running on a single node without HTTP access is, of course, not much faster than on my laptop and pretty pointless. But hey, I got the selfie: